6US5 DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template, 3'-amino primer, dGpNHpp analog, and Mn2+ date
authors Zhang, W., Lelyveld, V.S., Szostak, J.W.
compound source
symmetry
R_factor
R_Free 0.2784
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand C42, MN, SO4, XG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


  • Primary referenceSynthesis of phosphoramidate-linked DNA by a modified DNA polymerase., Lelyveld VS, Zhang W, Szostak JW, Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7276-7283. doi:, 10.1073/pnas.1922400117. Epub 2020 Mar 18. PMID:32188786
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (6us5.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (6us5.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 6US5
  • CSU: Contacts of Structural Units for 6US5
  • Structure Factors (1581 Kb)
  • Retrieve 6US5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6US5 from S2C, [Save to disk]
  • View 6US5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6US5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6us5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6us5_F] [6us5_C] [6us5_D] [6us5_B] [6us5_A] [6us5_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6US5
  • Community annotation for 6US5 at PDBWiki (http://pdbwiki.org)

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