6UV2 Rna Binding Protein Rna date Nov 01, 2019
title Crystal Structure Of The Core Domain Of Rna Helicase Ddx17 W Pri-125a-Oligo1
authors T.D.Ngo, A.C.Partin, Y.Nam
compound source
Molecule: Probable Atp-Dependent Rna Helicase Ddx17
Chain: A
Synonym: Dead Box Protein 17,Dead Box Protein P72,Dead Box P82,Rna-Dependent Helicase P72;
Ec: 3.6.4.13
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddx17
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna 125a_oligo1
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.170 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.722 112.722 99.426 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.89 Å
ligand ADP, BEF, MG enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (6uv2.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 6UV2
  • CSU: Contacts of Structural Units for 6UV2
  • Structure Factors (367 Kb)
  • Retrieve 6UV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UV2 from S2C, [Save to disk]
    • View 6UV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6UV2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uv2_A] [6uv2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6UV2
  • Community annotation for 6UV2 at PDBWiki (http://pdbwiki.org)

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