6V7O Ligase date Dec 09, 2019
title Structural Elucidation Of Peptide Binding To Klhl-12, A Subs Specific Adapter Protein In A Cul3-Ring E3 Ligase Complex
authors B.Zhao
compound source
Molecule: Kelch-Like Protein 12
Chain: A, B
Synonym: Cul3-Interacting Protein 1,Dkir Homolog,Hdkir
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klhl12, C3ip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dvl3-Peptide
Chain: C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.679 105.124 63.148 90.00 90.18 90.00
method X-Ray Diffractionresolution 2.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (6v7o.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (6v7o.pdb2.gz) 87 Kb
  • CSU: Contacts of Structural Units for 6V7O
  • Structure Factors (296 Kb)
  • Retrieve 6V7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V7O from S2C, [Save to disk]
    • View 6V7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V7O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v7o_B] [6v7o_D] [6v7o_A] [6v7o_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V7O
  • Community annotation for 6V7O at PDBWiki (http://pdbwiki.org)

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