6V97 Blood Clotting date Dec 13, 2019
title Kindlin-3 Double Deletion Mutant Short Form
authors Z.Xu, T.L.Zhang, Z.Xu, J.J.Sun, J.P.Ding, Y.Q.Ma
compound source
Molecule: Fermitin Family Homolog 3
Chain: A, B
Synonym: Kindlin-3, Mig2-Like Protein, Unc-112-Related Prot
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fermt3, Kind3, Mig2b, Urp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.502 131.487 134.151 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.38 Å
Primary referenceStructure basis of the FERM domain of kindlin-3 in supporting integrin alphaIIbbeta3 activation in platelets., Sun J, Xiao D, Ni Y, Zhang T, Cao Z, Xu Z, Nguyen H, Zhang J, White GC, Ding J, Ma YQ, Xu Z, Blood Adv. 2020 Jul 14;4(13):3128-3135. doi: 10.1182/bloodadvances.2020001575. PMID:32649767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (6v97.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (6v97.pdb2.gz) 144 Kb
  • CSU: Contacts of Structural Units for 6V97
  • Structure Factors (271 Kb)
  • Retrieve 6V97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V97 from S2C, [Save to disk]
    • View 6V97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V97
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v97_B] [6v97_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V97
  • Community annotation for 6V97 at PDBWiki (http://pdbwiki.org)

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