6V9H Transcription date Dec 13, 2019
title Ankyrin Repeat And Socs-Box Protein 9 (Asb9), Elonginb (Elob Elonginc (Eloc) Bound To Its Substrate Brain-Type Creatine (Ckb)
authors E.A.Komives, R.J.Lumpkin, R.W.Baker, A.E.Leschziner
compound source
Molecule: Creatine Kinase B-Type
Chain: A, B
Synonym: Brain Creatine Kinase,B-Ck,Creatine Kinase B Chain Phosphokinase B-Type,Cpk-B;
Ec: 2.7.3.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ckb, Ckbb
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Ankyrin Repeat And Socs Box Protein 9
Chain: C
Synonym: Asb-9
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Asb9
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Elongin-C
Chain: D
Synonym: Eloc,Elongin 15 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit C,Siii P15,Transcription Elongation Fac Polypeptide 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eloc, Tceb1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Elongin-B
Chain: E
Synonym: Elob,Elongin 18 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit B,Siii P18,Transcription Elongation Fac Polypeptide 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elob, Tceb2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.10 Å
ligand
enzyme Transferase E.C.2.7.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


Primary referenceStructure and dynamics of the ASB9 CUL-RING E3 Ligase., Lumpkin RJ, Baker RW, Leschziner AE, Komives EA, Nat Commun. 2020 Jun 8;11(1):2866. doi: 10.1038/s41467-020-16499-9. PMID:32513959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1856 Kb) [Save to disk]
  • Biological Unit Coordinates (6v9h.pdb1.gz) 185 Kb
  • CSU: Contacts of Structural Units for 6V9H
  • Retrieve 6V9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V9H from S2C, [Save to disk]
  • View 6V9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6V9H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v9h_B] [6v9h_E] [6v9h_D] [6v9h_C] [6v9h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6V9H
  • Community annotation for 6V9H at PDBWiki (http://pdbwiki.org)

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