6VAF Dna Binding Protein Dna date Dec 17, 2019
title Structure Of Mono-Ubiquitinated Fancd2 Bound To Non-Ubiquiti Fanci And To Dna
authors N.P.Pavletich
compound source
Molecule: Fanconi Anemia, Complementation Group I
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fanci
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Fanconi Anemia Group D2 Protein
Chain: B
Synonym: Protein Facd2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fancd2, Facd
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ubiquitin
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (29-Mer)
Chain: S
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (29-Mer)
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1745 Kb) [Save to disk]
  • Biological Unit Coordinates (6vaf.pdb1.gz) 1739 Kb
  • CSU: Contacts of Structural Units for 6VAF
  • Retrieve 6VAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VAF from S2C, [Save to disk]
  • View 6VAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VAF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vaf_B] [6vaf_T] [6vaf_A] [6vaf_D] [6vaf_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VAF
  • Community annotation for 6VAF at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science