6VCS	Dna Binding Protein Dna	date	Dec 22, 2019
title	Sra Domain Of Uhrf1 In Complex With Dna
authors	C.Dong, W.Tempel, C.Bountra, A.M.Edwards, C.H.Arrowsmith, J.Min, S Genomics Consortium (Sgc)
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1 Chain: A, B, E Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda,Nucle 95,Nuclear Zinc Finger Protein Np95,Hnp95,Ring Finger Prote Ring-Type E3 Ubiquitin Transferase Uhrf1,Transcription Fact Ubiquitin-Like Phd And Ring Finger Domain-Containing Protei Huhrf1,Ubiquitin-Like-Containing Phd And Ring Finger Domain 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Uhrf1, Icbp90, Np95, Rnf106 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: -V3r Expression_system_plasmid: Pnic-Ch
Molecule: Dna (5'-D(Gpcpcptpgptpapcpapgpgpc)-3' Chain: C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Unk-Unk-Unk-Unk Chain: G Engineered: Yes Other_details: Weak Electron Density, Which Might Arise Fro Acid Residues That May Connect Residues 482 And 494 In Chai		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.237 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.995 113.809 133.946 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	UNX	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk] Biological Unit Coordinates (6vcs.pdb1.gz) 201 Kb LPC: Ligand-Protein Contacts for 6VCS CSU: Contacts of Structural Units for 6VCS Structure Factors (10713 Kb) Retrieve 6VCS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6VCS from S2C, [Save to disk]

View 6VCS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6VCS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6vcs_D] [6vcs_C] [6vcs_E] [6vcs_A] [6vcs_G] [6vcs_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6VCS at PDBWiki (http://pdbwiki.org)

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