6VCS Dna Binding Protein Dna date Dec 22, 2019
title Sra Domain Of Uhrf1 In Complex With Dna
authors C.Dong, W.Tempel, C.Bountra, A.M.Edwards, C.H.Arrowsmith, J.Min, S Genomics Consortium (Sgc)
compound source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1
Chain: A, B, E
Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda,Nucle 95,Nuclear Zinc Finger Protein Np95,Hnp95,Ring Finger Prote Ring-Type E3 Ubiquitin Transferase Uhrf1,Transcription Fact Ubiquitin-Like Phd And Ring Finger Domain-Containing Protei Huhrf1,Ubiquitin-Like-Containing Phd And Ring Finger Domain 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uhrf1, Icbp90, Np95, Rnf106
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: -V3r
Expression_system_plasmid: Pnic-Ch

Molecule: Dna (5'-D(Gpcpcptpgptpapcpapgpgpc)-3'
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Unk-Unk-Unk-Unk
Chain: G
Engineered: Yes
Other_details: Weak Electron Density, Which Might Arise Fro Acid Residues That May Connect Residues 482 And 494 In Chai

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.237 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.995 113.809 133.946 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (6vcs.pdb1.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 6VCS
  • CSU: Contacts of Structural Units for 6VCS
  • Structure Factors (10713 Kb)
  • Retrieve 6VCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VCS from S2C, [Save to disk]
  • View 6VCS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VCS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vcs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vcs_D] [6vcs_C] [6vcs_E] [6vcs_A] [6vcs_G] [6vcs_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VCS
  • Community annotation for 6VCS at PDBWiki (http://pdbwiki.org)

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