6VEN | Transferase Structural Protein Dna | date | Jan 02, 2020 |
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title | Yeast Compass In Complex With A Ubiquitinated Nucleosome | ||||||||||||||||||||||||||||||||||||||||||
authors | E.J.Worden, C.Wolberger | ||||||||||||||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H3.2 Chain: A, E Engineered: Yes Mutation: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe-81l | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H4 Chain: B, F Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Rosetta 2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H2a Type 1 Chain: C, G Engineered: Yes Mutation: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes Mutation: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Rosetta 2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 601 Dna (146-Mer) Chain: I Engineered: Yes |
Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 601 Dna (146-Mer) Chain: J Engineered: Yes |
Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Ubiquitin Chain: K Engineered: Yes Mutation: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Compass Component Swd3 Chain: L Synonym: Complex Proteins Associated With Set1 Protein Swd3 Component Swd3; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Swd3, Cps30, Saf35, Ybr175w, Ybr1237 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi Five Expression_system_vector_type: Bacmid | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Compass Component Swd1 Chain: M Synonym: Complex Proteins Associated With Set1 Protein Swd1 Component Swd1; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Swd1, Cps50, Saf49, Yar003w, Fun16 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi Five Expression_system_vector_type: Bacmid | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-4 S Chain: N Fragment: Unp Residues 762-1080 Synonym: Compass Component Set1,Lysine N-Methyltransferase Domain-Containing Protein 1; Ec: 2.1.1.354 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Set1, Kmt2, Ytx1, Yhr119w Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi Five Expression_system_vector_type: Bacmid | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Compass Component Bre2 Chain: O Synonym: Brefeldin-A Sensitivity Protein 2,Complex Proteins Associated With Set1 Protein Bre2,Set1c Component Bre2; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Bre2, Cps60, Ylr015w Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi Five Expression_system_vector_type: Bacmid | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Compass Component Sdc1 Chain: P, Q Synonym: Complex Proteins Associated With Set1 Protein Sdc1 Component Sdc1,Suppressor Of Cdc25 Protein 1; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Sdc1, Cps25, Saf19, Ydr469w Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi Five Expression_system_vector_type: Bacmid | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Compass Component Spp1 Chain: R Synonym: Complex Proteins Associated With Set1 Protein Spp1 Component Spp1,Suppressor Of Prp Protein 1; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Spp1, Cps40, Saf41, Ypl138c Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi Five Expression_system_vector_type: Bacmid | ||||||||||||||||||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.37 Å | ||||||||||||||||||||||||||||||||||||||||
ligand | NLE, SAM, ZN | enzyme | Transferase E.C.2.1.1.354 BRENDA | ||||||||||||||||||||||||||||||||||||||||
Gene Ontology |
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