6VHV Biosynthetic Protein date Jan 10, 2020
title Klebsiella Oxytoca Npsa In Complex With 3-Hydroxyanthranilyl
authors D.F.Kreitler, A.M.Gulick
compound source
Molecule: Npsa Adenylation Domain
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Klebsiella Oxytoca
Organism_taxid: 571
Strain: Npsa
Gene: Agf18_11095
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
symmetry Space Group: I 2 2 2
R_factor 0.218 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.689 87.817 165.778 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.89 Å
ligand QXG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced by the Opportunistic Pathogen Klebsiella oxytoca., Alexander EM, Kreitler DF, Guidolin V, Hurben AK, Drake E, Villalta PW, Balbo S, Gulick AM, Aldrich CC, ACS Infect Dis. 2020 Jun 24. doi: 10.1021/acsinfecdis.0c00326. PMID:32485104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (6vhv.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (6vhv.pdb2.gz) 533 Kb
  • LPC: Ligand-Protein Contacts for 6VHV
  • CSU: Contacts of Structural Units for 6VHV
  • Structure Factors (447 Kb)
  • Retrieve 6VHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VHV from S2C, [Save to disk]
    • View 6VHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VHV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vhv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VHV
  • Community annotation for 6VHV at PDBWiki (http://pdbwiki.org)

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