6VKM Viral Protein date Jan 21, 2020
title Crystal Structure Of Stabilized Gp From Makona Variant Of Eb
authors M.S.A.Gilman, L.Rutten, J.P.M.Langedijk, J.S.Mclellan
compound source
Molecule: Virion Spike Glycoprotein
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Zaire Ebolavirus
Organism_taxid: 186538
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f
symmetry Space Group: H 3 2
R_factor 0.284 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.110 113.110 393.180 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (6vkm.pdb1.gz) 345 Kb
  • LPC: Ligand-Protein Contacts for 6VKM
  • CSU: Contacts of Structural Units for 6VKM
  • Structure Factors (500 Kb)
  • Retrieve 6VKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VKM from S2C, [Save to disk]
    • View 6VKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VKM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vkm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VKM
  • Community annotation for 6VKM at PDBWiki (http://pdbwiki.org)

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