6VLD Transferase date Jan 23, 2020
title Crystal Structure Of Human Alpha 1,6-Fucosyltransferase, Fut Gdp And A2sgp
authors M.A.Jarva, M.Dramicanin, J.P.Lingford, R.Mao, A.John, E.D.Goddard
compound source
Molecule: Alpha-(1,6)-Fucosyltransferase
Chain: A, B, G, H
Synonym: Alpha1-6fuct,Fucosyltransferase 8,Gdp-L-Fuc:N-Acet Glucosaminide Alpha1,6-Fucosyltransferase,Gdp-Fucose--Glyco Fucosyltransferase,Glycoprotein 6-Alpha-L-Fucosyltransferas
Ec: 2.4.1.68
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fut8
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
208.307 68.453 249.983 90.00 111.21 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand ASN, BMA, GDP, MAN, NAG, SO4 enzyme Transferase E.C.2.4.1.68 BRENDA
Primary referenceStructural basis of substrate recognition and catalysis by fucosyltransferase 8., Jarva MA, Dramicanin M, Lingford JP, Mao R, John A, Jarman KE, Grinter R, Goddard-Borger ED, J Biol Chem. 2020 May 8;295(19):6677-6688. doi: 10.1074/jbc.RA120.013291. Epub, 2020 Mar 27. PMID:32220931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (649 Kb) [Save to disk]
  • Biological Unit Coordinates (6vld.pdb1.gz) 322 Kb
  • Biological Unit Coordinates (6vld.pdb2.gz) 323 Kb
  • LPC: Ligand-Protein Contacts for 6VLD
  • CSU: Contacts of Structural Units for 6VLD
  • Structure Factors (6267 Kb)
  • Retrieve 6VLD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VLD from S2C, [Save to disk]
  • View 6VLD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VLD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vld_G] [6vld_B] [6vld_H] [6vld_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VLD
  • Community annotation for 6VLD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science