6VPQ Translation date Feb 04, 2020
title Crystal Structure Of The C-Terminal Domain Of Denr
authors I.B.Lomakin, T.A.Steitz
compound source
Molecule: Density-Regulated Protein
Chain: A, B, C, D, E, F
Synonym: Drp,Protein Drp1,Smooth Muscle Cell-Associated Pro Smap-3;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Denr, Drp1, H14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.178 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.670 47.260 95.500 90.00 106.29 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand ACT, CA, CSO, MG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (6vpq.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (6vpq.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (6vpq.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (6vpq.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (6vpq.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (6vpq.pdb6.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 6VPQ
  • CSU: Contacts of Structural Units for 6VPQ
  • Structure Factors (908 Kb)
  • Retrieve 6VPQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VPQ from S2C, [Save to disk]
    • View 6VPQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VPQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vpq_E] [6vpq_B] [6vpq_C] [6vpq_D] [6vpq_A] [6vpq_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VPQ
  • Community annotation for 6VPQ at PDBWiki (http://pdbwiki.org)

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