6VWK Membrane Protein date Feb 20, 2020
title E. Coli Atp Synthase Adp Sub-State 3a Fo Focussed
authors A.G.Stewart, J.L.Walshe, M.Sobti
compound source
Molecule: Atp Synthase Subunit C
Chain: I, J, L, M, N, O, P, Q, R, S
Synonym: Atp Synthase F(0) Sector Subunit C,F-Type Atpase S F-Atpase Subunit C,Lipid-Binding Protein;
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpe, Ecjg_03465
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit B
Chain: X, Y
Synonym: Atp Synthase F(0) Sector Subunit B,Atpase Subunit Atpase Subunit B,F-Atpase Subunit B;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit A
Chain: a
Synonym: Atp Synthase F0 Sector Subunit A,F-Atpase Subunit
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
S, O, J, N, P, Q, M, R, I, L


X, Y


a


Primary referenceCryo-EM structures provide insight into how E. coli F1Fo ATP synthase accommodates symmetry mismatch., Sobti M, Walshe JL, Wu D, Ishmukhametov R, Zeng YC, Robinson CV, Berry RM, Stewart AG, Nat Commun. 2020 May 26;11(1):2615. doi: 10.1038/s41467-020-16387-2. PMID:32457314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (6vwk.pdb1.gz) 150 Kb
  • CSU: Contacts of Structural Units for 6VWK
  • Retrieve 6VWK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VWK from S2C, [Save to disk]
    • View 6VWK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VWK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vwk_L] [6vwk_N] [6vwk_O] [6vwk_R] [6vwk_Q] [6vwk_X] [6vwk_I] [6vwk_M] [6vwk_P] [6vwk_a] [6vwk_Y] [6vwk_J] [6vwk_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VWK
  • Community annotation for 6VWK at PDBWiki (http://pdbwiki.org)

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