6VYI Transferase date Feb 26, 2020
title Cryo-Em Structure Of Human Diacylglycerol O-Acyltransferase
authors X.Sui, K.Wang, N.Gluchowski, M.Liao, C.T.Walther, V.R.Farese
compound source
Molecule: Diacylglycerol O-Acyltransferase 1
Chain: A, B
Synonym: Acat-Related Gene Product 1,Acyl-Coa Retinol O-Fat Acyltransferase,Retinol O-Fatty-Acyltransferase,Diglyceride Acyltransferase;
Ec: 2.3.1.20
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dgat1, Agrp1, Dgat
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand 6OU enzyme Transferase E.C.2.3.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • retinol O-fatty-acyltransfer...


    • Primary referenceStructure and catalytic mechanism of a human triacylglycerol-synthesis enzyme., Sui X, Wang K, Gluchowski NL, Elliott SD, Liao M, Walther TC, Farese RV Jr, Nature. 2020 May;581(7808):323-328. doi: 10.1038/s41586-020-2289-6. Epub 2020 May, 13. PMID:32433611
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (6vyi.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6VYI
  • CSU: Contacts of Structural Units for 6VYI
  • Retrieve 6VYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VYI from S2C, [Save to disk]
    • View 6VYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VYI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vyi_A] [6vyi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VYI
  • Community annotation for 6VYI at PDBWiki (http://pdbwiki.org)

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