6VZ4 Motor Protein date Feb 27, 2020
title Cryo-Em Structure Of Sth1-Arp7-Arp9-Rtt102 Bound To The Nucl Adp Beryllium Fluoride State
authors A.E.Leschziner, R.W.Baker
compound source
Molecule: Histone H3
Chain: A, E
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h3g, H3c8, H3l
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta

Molecule: Histone H2a
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta

Molecule: Histone H2b
Chain: D, H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: H2b, Xelaev_18028547mg
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta

Molecule: Dna (185-Mer)
Chain: I
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5 Alpha

Molecule: Dna (185-Mer)
Chain: J
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5 Alpha

Molecule: Nuclear Protein Sth1nps1
Chain: K
Synonym: Atp-Dependent Helicase Sth1,Chromatin Structure-Re Complex Protein Sth1,Snf2 Homolog;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Sth1, Nps1, Yil126w
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta

Molecule: Actin-Related Protein 7
Chain: L
Synonym: Actin-Like Protein Arp7,Chromatin Structure-Remode Complex Protein Arp7,Swisnf Complex Component Arp7;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Arp7, Swp61, Ypr034w, Yp9367.14
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Actin-Like Protein Arp9
Chain: M
Synonym: Chromatin Structure-Remodeling Complex Protein Arp Complex Component Arp9;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Arp9
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta

Molecule: Regulator Of Ty1 Transposition Protein 102
Chain: N
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Rtt102, Ygr275w, G9378
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ADP, ATP, BEF, MG enzyme Hydrolase E.C.3.6.4.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4262 Kb) [Save to disk]
  • Biological Unit Coordinates (6vz4.pdb1.gz) 423 Kb
  • LPC: Ligand-Protein Contacts for 6VZ4
  • CSU: Contacts of Structural Units for 6VZ4
  • Retrieve 6VZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VZ4 from S2C, [Save to disk]
  • View 6VZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VZ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vz4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vz4_I] [6vz4_B] [6vz4_C] [6vz4_K] [6vz4_N] [6vz4_A] [6vz4_L] [6vz4_H] [6vz4_E] [6vz4_D] [6vz4_M] [6vz4_J] [6vz4_F] [6vz4_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VZ4
  • Community annotation for 6VZ4 at PDBWiki (http://pdbwiki.org)

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