6W65 Transferase date Mar 16, 2020
title Human Parp16 In Complex With Rbn010860
authors K.K.Swinger, T.J.Wigle, K.W.Kuntz
compound source
Molecule: Protein Mono-Adp-Ribosyltransferase Parp16
Chain: A, B, C
Synonym: Adp-Ribosyltransferase Diphtheria Toxin-Like 15,Po Ribose] Polymerase 16,Parp-16;
Ec: 2.4.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp16, Artd15, C15orf30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.190 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.120 147.120 99.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand CIT, EDO, GOL, PEG, T9D enzyme Transferase E.C.2.4.2 BRENDA
Primary referenceIn Vitro and Cellular Probes to Study PARP Enzyme Target Engagement., Wigle TJ, Blackwell DJ, Schenkel LB, Ren Y, Church WD, Desai HJ, Swinger KK, Santospago AG, Majer CR, Lu AZ, Niepel M, Perl NR, Vasbinder MM, Keilhack H, Kuntz KW, Cell Chem Biol. 2020 Jul 16;27(7):877-887.e14. doi:, 10.1016/j.chembiol.2020.06.009. PMID:32679093
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (6w65.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (6w65.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (6w65.pdb3.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 6W65
  • CSU: Contacts of Structural Units for 6W65
  • Structure Factors (1744 Kb)
  • Retrieve 6W65 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W65 from S2C, [Save to disk]
    • View 6W65 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6W65
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w65_C] [6w65_A] [6w65_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6W65
  • Community annotation for 6W65 at PDBWiki (http://pdbwiki.org)

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