6W8V Transferase Dna date Mar 21, 2020
title Crystal Structure Of Mouse Dnmt1 In Complex With Acg Dna
authors H.Anteneh, J.Song
compound source
Molecule: Dna (Cytosine-5)-Methyltransferase 1
Chain: A, B
Synonym: Met-1,Dna Methyltransferase Mmui,M.Mmui,Mcmt
Ec: 2.1.1.37
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Dnmt1, Dnmt, Met1, Uim
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Acg Dna (5'-D(Cpcptptpcp(5cm)Pgptpapap
Chain: C, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Acg Dna (5'-D(Apcptptpap(C49)Pgpgpapap
Chain: D, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.240 152.149 96.049 90.00 94.29 90.00
method X-Ray Diffractionresolution 3.12 Å
ligand 5CM, C49, SAH, ZN enzyme Transferase E.C.2.1.1.37 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (611 Kb) [Save to disk]
  • Biological Unit Coordinates (6w8v.pdb1.gz) 600 Kb
  • LPC: Ligand-Protein Contacts for 6W8V
  • CSU: Contacts of Structural Units for 6W8V
  • Structure Factors (878 Kb)
  • Retrieve 6W8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W8V from S2C, [Save to disk]
  • View 6W8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6W8V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6w8v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w8v_F] [6w8v_D] [6w8v_E] [6w8v_B] [6w8v_A] [6w8v_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6W8V
  • Community annotation for 6W8V at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science