6WGC Replication Dna date Apr 05, 2020
title Atomic Model Of Semi-Attached Mutant Occm-Dna Complex (Orc-C Mcm2-7 With Mcm6 Whd Truncation)
authors Z.Yuan, S.Schneider, T.Dodd, A.Riera, L.Bai, C.Yan, I.Magdalou, I.I B.Stillman, H.Li, C.Speck
compound source
Molecule: Cell Division Control Protein 6
Chain: 9
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Cdc6, Yjl194w, J0347
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 1
Chain: A
Synonym: Origin Recognition Complex 120 Kda Subunit
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc1, Yml065w
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 2
Chain: B
Synonym: Origin Recognition Complex 71 Kda Subunit
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc2, Rrr1, Sir5, Ybr060c, Ybr0523
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 3
Chain: C
Synonym: Origin Recognition Complex 62 Kda Subunit
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc3, Oaf1, Oif1, Yll004w, L1365
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 5
Chain: E
Synonym: Origin Recognition Complex 53 Kda Subunit
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc5, Ynl261w, N0834
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 4
Chain: D
Synonym: Origin Recognition Complex 56 Kda Subunit
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc4, Ypr162c, P9325.5
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 6
Chain: F
Synonym: Acs-Associated Protein 1,Origin Recognition Comple Subunit;
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc6, Aap1, Yhr118c
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm3
Chain: 3
Synonym: Minichromosome Maintenance Protein 3
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm3, Yel032w, Sygp-Orf23
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm7
Chain: 7
Synonym: Cell Division Control Protein 47, Minichromosome M Protein 7;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm7, Cdc47, Ybr202w, Ybr1441
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna (41-Mer)
Chain: G
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna (41-Mer)
Chain: H
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.30 Å
ligand AGS enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
3
  • chromatin silencing at telom...

    • 7
  • chromatin silencing at telom...

    • 9


    A


    B
  • chromatin silencing at telom...

    • C


    D


    E


    F


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (459 Kb) [Save to disk]
  • Biological Unit Coordinates (6wgc.pdb1.gz) 442 Kb
  • LPC: Ligand-Protein Contacts for 6WGC
  • CSU: Contacts of Structural Units for 6WGC
  • Retrieve 6WGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WGC from S2C, [Save to disk]
    • View 6WGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WGC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wgc_E] [6wgc_G] [6wgc_9] [6wgc_7] [6wgc_B] [6wgc_F] [6wgc_3] [6wgc_D] [6wgc_C] [6wgc_A] [6wgc_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WGC
  • Community annotation for 6WGC at PDBWiki (http://pdbwiki.org)

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