6WJH Ligase date Apr 13, 2020
title Crystal Structure Of Mage-A11 Bound To The Pcf11 Degron
authors D.J.Miller, X.Huang
compound source
Molecule: Fusion Protein Of Pcf11 And Mage-A11
Chain: A, B, C, D
Synonym: Pre-Mrna Cleavage Complex II Protein Pcf11,Cancer Antigen 1.11,Ct1.11,Mage-11 Antigen;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcf11, Kiaa0824, Magea11, Mage11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.205 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.493 78.195 72.911 77.44 77.34 89.59
method X-Ray Diffractionresolution 2.19 Å
Primary referenceStructural basis for substrate recognition and chemical inhibition of oncogenic MAGE ubiquitin ligases., Yang SW, Huang X, Lin W, Min J, Miller DJ, Mayasundari A, Rodrigues P, Griffith EC, Gee CT, Li L, Li W, Lee RE, Rankovic Z, Chen T, Potts PR, Nat Commun. 2020 Oct 1;11(1):4931. doi: 10.1038/s41467-020-18708-x. PMID:33004795
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (6wjh.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (6wjh.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (6wjh.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (6wjh.pdb4.gz) 38 Kb
  • CSU: Contacts of Structural Units for 6WJH
  • Structure Factors (2346 Kb)
  • Retrieve 6WJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WJH from S2C, [Save to disk]
    • View 6WJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wjh_B] [6wjh_A] [6wjh_C] [6wjh_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WJH
  • Community annotation for 6WJH at PDBWiki (http://pdbwiki.org)

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