6WNX Ligase date Apr 23, 2020
title Fbxw11-Skp1 In Complex With A Pser33pser37 Beta-Catenin Pep
authors D.Ivanochko, A.M.Edwards, C.Bountra, C.H.Arrowsmith, J.Boettcher Structural Genomics Consortium (Sgc)
compound source
Molecule: F-Boxwd Repeat-Containing Protein 11
Chain: A, D, G
Synonym: F-Box And Wd Repeats Protein Beta-Trcp2,F-Boxwd R Containing Protein 1b,Homologous To Slimb Protein,Hos;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbxw11, Btrcp2, Fbw1b, Fbxw1b, Kiaa0696
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: S-Phase Kinase-Associated Protein 1
Chain: B, E, H
Synonym: Cyclin-Acdk2-Associated Protein P19,P19a,Organ Of Protein 2,Ocp-2,Organ Of Corti Protein II,Ocp-II,Rna Polyme Elongation Factor-Like Protein,Siii,Transcription Elongatio Polypeptide 1-Like,P19skp1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Skp1, Emc19, Ocp2, Skp1a, Tceb1l
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Catenin Beta-1
Chain: C, F, I
Synonym: Beta-Catenin
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.732 81.866 133.198 90.00 92.92 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL, NA, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (561 Kb) [Save to disk]
  • Biological Unit Coordinates (6wnx.pdb1.gz) 190 Kb
  • Biological Unit Coordinates (6wnx.pdb2.gz) 185 Kb
  • Biological Unit Coordinates (6wnx.pdb3.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 6WNX
  • CSU: Contacts of Structural Units for 6WNX
  • Structure Factors (2282 Kb)
  • Retrieve 6WNX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WNX from S2C, [Save to disk]
  • View 6WNX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WNX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wnx_F] [6wnx_G] [6wnx_A] [6wnx_C] [6wnx_B] [6wnx_H] [6wnx_I] [6wnx_E] [6wnx_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WNX
  • Community annotation for 6WNX at PDBWiki (http://pdbwiki.org)

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