6WPP Immune System date Apr 27, 2020
title Human Nik In Complex With Ligand Compound X
authors A.Y.Shih, M.Hack, T.Mirzadegan
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 14
Chain: A, B
Fragment: Kinase Domain Residues 343-686
Synonym: Nf-Kappa-Beta-Inducing Kinase,Hsnik,Serinethreoni Kinase Nik;
Ec: 2.7.11.25
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k14, Nik
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.483 81.521 78.420 90.00 111.43 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand PZ4 enzyme Transferase E.C.2.7.11.25 BRENDA
Primary referenceImpact of Protein Preparation on Resulting Accuracy of FEP Calculations., Shih AY, Hack M, Mirzadegan T, J Chem Inf Model. 2020 Aug 2. doi: 10.1021/acs.jcim.0c00445. PMID:32786514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (6wpp.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (6wpp.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 6WPP
  • CSU: Contacts of Structural Units for 6WPP
  • Structure Factors (479 Kb)
  • Retrieve 6WPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WPP from S2C, [Save to disk]
    • View 6WPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WPP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wpp_A] [6wpp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WPP
  • Community annotation for 6WPP at PDBWiki (http://pdbwiki.org)

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