6WVG Membrane Protein date May 06, 2020
title Human Cd53
authors Y.Yang, S.Liu, W.Li
compound source
Molecule: Green Fluorescent Protein, Leukocyte Surface Anti Chimera;
Chain: A, B
Synonym: Cell Surface Glycoprotein Cd53,Tetraspanin-25,Tspa
Engineered: Yes
 Organism_scientific: Aequorea Victoria, Homo Sapiens
Organism_common: Jellyfish, Human
Organism_taxid: 6100, 9606
Gene: Gfp, Cd53, Mox44, Tspan25
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.310 209.770 73.280 90.00 100.29 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CRO, NAG, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOpen conformation of tetraspanins shapes interaction partner networks on cell membranes., Yang Y, Liu XR, Greenberg ZJ, Zhou F, He P, Fan L, Liu S, Shen G, Egawa T, Gross ML, Schuettpelz LG, Li W, EMBO J. 2020 Sep 15;39(18):e105246. doi: 10.15252/embj.2020105246. Epub 2020 Aug , 16. PMID:32974937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (6wvg.pdb1.gz) 146 Kb
  • Biological Unit Coordinates (6wvg.pdb2.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 6WVG
  • CSU: Contacts of Structural Units for 6WVG
  • Structure Factors (638 Kb)
  • Retrieve 6WVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WVG from S2C, [Save to disk]
    • View 6WVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WVG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wvg_B] [6wvg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WVG
  • Community annotation for 6WVG at PDBWiki (http://pdbwiki.org)

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