6WVJ Transcription Dna Rna date May 06, 2020
title Cryo-Em Structure Of Bacillus Subtilis Rna Polymerase Elonga Complex
authors T.Newing, G.Tolun, A.J.Oakley
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Bacillus Subtilis (Strain 168)
Organism_taxid: 224308
Strain: 168
Gene: Rpoa, Bsu01430
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Png1256

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Rpob, A3772_00695, Bs16045_00134, Eta10_00685, Etk61_ Gii79_00680;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Png1256

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Rpoc, A3772_00700, B4122_1444, B4417_1498, Bs16045_00 Eta10_00690, Etk61_00690, Gii79_00685;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Png1256

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: F
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Rpoz, A3772_08560, Amc98_03500, B4122_2750, B4417_358 Bs16045_01675, Dfo69_2436, Eta10_08595, Etk61_08870, Fiu26_ Fzc71_02355, Gii79_08370, Sc09_contig19orf01098;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Png1256

Molecule: Dna (5'- D(Tpgptpcpgpgpgpcpgptpcpcpgpcpgpcpgpcpc)
Chain: T

Organism_scientific: Escherichia Coli Bl21(De3)
Organism_taxid: 469008
Strain: Bl21(De3)

Molecule: Rna (5'-R(Pgpgpcpgpcpgpcpg)-3')
Chain: R

Organism_scientific: Escherichia Coli Bl21(De3)
Organism_taxid: 469008
Strain: Bl21(De3)

Molecule: Dna (5'-D(Papcpgpcpcpcpgpapcpa)-3')
Chain: N

Organism_scientific: Escherichia Coli Bl21(De3)
Organism_taxid: 469008
Strain: Bl21(De3)
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.36 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]
  • Biological Unit Coordinates (6wvj.pdb1.gz) 398 Kb
  • LPC: Ligand-Protein Contacts for 6WVJ
  • CSU: Contacts of Structural Units for 6WVJ
  • Retrieve 6WVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WVJ from S2C, [Save to disk]
  • View 6WVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WVJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wvj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wvj_T] [6wvj_N] [6wvj_A] [6wvj_D] [6wvj_R] [6wvj_C] [6wvj_F] [6wvj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WVJ
  • Community annotation for 6WVJ at PDBWiki (http://pdbwiki.org)

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