6Y3C Oxidoreductase date Feb 18, 2020
title Human Cox-1 Crystal Structure
authors M.Miciaccia, B.D.Belviso, M.Iaselli, S.Ferorelli, M.G.Perrone, R.Caliandro, A.Scilimati
compound source
Molecule: Prostaglandin Gh Synthase 1
Chain: A
Synonym: Cyclooxygenase-1,Cox-1,Prostaglandin H2 Synthase 1 Prostaglandin-Endoperoxide Synthase 1;
Ec: 1.14.99.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptgs1, Cox1
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
symmetry Space Group: P 65 2 2
R_factor 0.209 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.110 182.110 103.240 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.36 Å
ligand BMA, FLC, NAG enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (6y3c.pdb1.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 6Y3C
  • CSU: Contacts of Structural Units for 6Y3C
  • Structure Factors (305 Kb)
  • Retrieve 6Y3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y3C from S2C, [Save to disk]
    • View 6Y3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Y3C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y3c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Y3C
  • Community annotation for 6Y3C at PDBWiki (http://pdbwiki.org)

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