6Y87 Transferase date Mar 03, 2020
title Crystal Structure Of The Homospermidine Synthase (Hss) From Pseudomonas Aeruginosa In Complex With Nad And Put
authors F.Helfrich, A.J.Scheidig
compound source
Molecule: Homospermidine Synthase
Chain: A, B, C, D, E, F
Synonym: Putative Homospermidine Synthase
Ec: 2.5.1.44
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Cl-17, Hss, Dy940_20665, Dz962_18725, Ipc1481_09030, Ipc1509_31480, Ipc669_32825, Pacl_0336, Pacl_0523, Pamh19_5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 1 2
R_factor 0.203 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.242 103.242 548.005 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.15 Å
ligand NAD, PUT enzyme Transferase E.C.2.5.1.44 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (859 Kb) [Save to disk]
  • Biological Unit Coordinates (6y87.pdb1.gz) 149 Kb
  • Biological Unit Coordinates (6y87.pdb2.gz) 149 Kb
  • Biological Unit Coordinates (6y87.pdb3.gz) 145 Kb
  • Biological Unit Coordinates (6y87.pdb4.gz) 144 Kb
  • Biological Unit Coordinates (6y87.pdb5.gz) 150 Kb
  • Biological Unit Coordinates (6y87.pdb6.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 6Y87
  • CSU: Contacts of Structural Units for 6Y87
  • Structure Factors (5536 Kb)
  • Retrieve 6Y87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y87 from S2C, [Save to disk]
    • View 6Y87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Y87
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y87_F] [6y87_D] [6y87_C] [6y87_B] [6y87_A] [6y87_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Y87
  • Community annotation for 6Y87 at PDBWiki (http://pdbwiki.org)

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