6YHZ Protein Binding date Mar 31, 2020
title Uvrd Helicase Rna Polymerase Interactions Are Governed By Uv Carboxy Terminal Tudor Domain.
authors A.A.Kawale, B.B.Burmann
compound source
Molecule: Transcription-Repair-Coupling Factor
Chain: A
Synonym: Trcf
Ec: 3.6.4.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Mfd, Elt49_18965
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Bl21 Startm (De3)
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.4 BRENDA
Primary referenceUvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain., Kawale AA, Burmann BM, Commun Biol. 2020 Oct 23;3(1):607. doi: 10.1038/s42003-020-01332-2. PMID:33097771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (6yhz.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 6YHZ
  • Original NMR restraints for 6YHZ from PDB
  • Retrieve 6YHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YHZ from S2C, [Save to disk]
  • View 6YHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YHZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yhz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YHZ
  • Community annotation for 6YHZ at PDBWiki (http://pdbwiki.org)

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