6YIR Hydrolase date Apr 01, 2020
title Crystal Structure Of Bacillus Subtilis Msmx Atpase
authors F.Leisico, T.Santos-Silva, M.J.Romao
compound source
Molecule: Oligosaccharides Import Atp-Binding Protein Msmx
Chain: A
Synonym: Maltodextrin Import Atp-Binding Protein Msmx, Melibioseraffinosestachyose Import Atp-Binding Protein Ms
Ec: 7.5.2.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Subtilis (Strain 168)
Organism_taxid: 224308
Strain: 168
Gene: Msmx, Yxkg, Bsu38810
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.197 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.758 94.247 132.263 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand PGE, SO4 enzyme E.C.7.5.2 BRENDA
Primary referenceMultitask ATPases (NBDs) of bacterial ABC importers type I and their interspecies exchangeability., Leisico F, Godinho LM, Goncalves IC, Silva SP, Carneiro B, Romao MJ, Santos-Silva T, de Sa-Nogueira I, Sci Rep. 2020 Nov 11;10(1):19564. doi: 10.1038/s41598-020-76444-0. PMID:33177617
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (6yir.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 6YIR
  • CSU: Contacts of Structural Units for 6YIR
  • Structure Factors (1498 Kb)
  • Retrieve 6YIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YIR from S2C, [Save to disk]
  • View 6YIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YIR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yir_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YIR
  • Community annotation for 6YIR at PDBWiki (http://pdbwiki.org)

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