OCA Atlas for 6YJ4

6YJ4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2MR, 3PE, CDL, EHZ, FES, FME, FMN, LMT, NDP, PLC, SF4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B
C
D, g
E
F
G
H
I
J
K
L
M
N
S
T, U
V
W, p, n, Q, X
Y
a, k, Z
d, b, O, i
e
f	electron transfer activity
l	NADH dehydrogenase activity
m
o

Primary reference

Mitochondrial complex I structure reveals ordered water molecules for catalysis and proton translocation., Grba DN, Hirst J, Nat Struct Mol Biol. 2020 Aug 3. pii: 10.1038/s41594-020-0473-x. doi:, 10.1038/s41594-020-0473-x. PMID:32747785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1210 Kb) [Save to disk]

Biological Unit Coordinates (6yj4.pdb1.gz) 1185 Kb

LPC: Ligand-Protein Contacts for 6YJ4

CSU: Contacts of Structural Units for 6YJ4

Retrieve 6YJ4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6YJ4 from S2C, [Save to disk]

View 6YJ4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6yj4_Y] [6yj4_A] [6yj4_B] [6yj4_C] [6yj4_D] [6yj4_E] [6yj4_F] [6yj4_G] [6yj4_H] [6yj4_I] [6yj4_J] [6yj4_K] [6yj4_L] [6yj4_M] [6yj4_N] [6yj4_O] [6yj4_P] [6yj4_Q] [6yj4_R] [6yj4_S] [6yj4_T] [6yj4_U] [6yj4_V] [6yj4_W] [6yj4_X] [6yj4_Z] [6yj4_a] [6yj4_b] [6yj4_c] [6yj4_d] [6yj4_e] [6yj4_f] [6yj4_g] [6yj4_h] [6yj4_i] [6yj4_j] [6yj4_k] [6yj4_l] [6yj4_m] [6yj4_n] [6yj4_o] [6yj4_p]

SWISS-PROT database:

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