6YLC Transferase date Apr 07, 2020
title Biochemical, Cellular And Structural Characterization Of Nov Inhibitors
authors U.Graedler
compound source
Molecule: Mitogen-Activated Protein Kinase 6
Chain: A, B, C, D
Synonym: Mapk 6,Extracellular Signal-Regulated Kinase 3,Erk Kinase Isoform P97,P97-Mapk;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk6, Erk3, Prkm6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.332 101.423 195.889 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand OXW enzyme Transferase E.C.2.7.11.24 BRENDA
Primary referenceBiochemical, cellular and structural characterization of novel and selective ERK3 inhibitors., Gradler U, Busch M, Leuthner B, Raba M, Burgdorf L, Lehmann M, Linde N, Esdar C, Bioorg Med Chem Lett. 2020 Sep 11;30(22):127551. doi: 10.1016/j.bmcl.2020.127551. PMID:32927028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (400 Kb) [Save to disk]
  • Biological Unit Coordinates (6ylc.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (6ylc.pdb2.gz) 102 Kb
  • Biological Unit Coordinates (6ylc.pdb3.gz) 99 Kb
  • Biological Unit Coordinates (6ylc.pdb4.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 6YLC
  • CSU: Contacts of Structural Units for 6YLC
  • Structure Factors (1394 Kb)
  • Retrieve 6YLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YLC from S2C, [Save to disk]
  • View 6YLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YLC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ylc_D] [6ylc_C] [6ylc_B] [6ylc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YLC
  • Community annotation for 6YLC at PDBWiki (http://pdbwiki.org)

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