6E1Q Ligase date Jul 10, 2018
title Atgh3.15 Acyl Acid Amido Synthetase In Complex With 2,4-Db
authors A.M.Sharp, S.G.Lee, J.M.Jez
compound source
Molecule: Atgh3.15 Acyl Acid Amido Synthetase
Chain: A
Synonym: Auxin-Responsive Gh3 Family Protein, Putative Auxi Responsive Protein, At5g13370;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: At5g13370, At5g13370t22n19_20, T22n19.20, T22n19_20
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 2 2 21
R_factor 0.182 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.798 154.789 73.424 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand CFA, PO4 enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceModification of auxinic phenoxyalkanoic acid herbicides by the acyl acid amido synthetase GH3.15 from Arabidopsis., Sherp AM, Lee SG, Schraft E, Jez JM, J Biol Chem. 2018 Oct 12. pii: RA118.004975. doi: 10.1074/jbc.RA118.004975. PMID:30315112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (6e1q.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 6E1Q
  • CSU: Contacts of Structural Units for 6E1Q
  • Structure Factors (1202 Kb)
  • Retrieve 6E1Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E1Q from S2C, [Save to disk]
  • View 6E1Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E1Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e1q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E1Q
  • Community annotation for 6E1Q at PDBWiki (http://pdbwiki.org)

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