6LWR Dna Binding Protein Dna date Feb 07, 2020
title Crystal Structure Of Human Neil1(K242) Bound To Duplex Dna C A Cleaved C:T Mismatch
authors M.H.Liu, J.Zhang, C.X.Zhu, X.X.Zhang, Y.Q.Gao, C.Q.Yi
compound source
Molecule: Endonuclease 8-Like 1
Chain: A, E
Synonym: Dna Glycosylaseap Lyase Neil1,Dna-(Apurinic Or Ap Site) Lyase Neil1,Endonuclease Viii-Like 1,Fpg1,Nei Homolog Nei-Like Protein 1;
Ec: 3.2.2.-,4.2.99.18
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Neil1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpgptpcpcp(Pda))-3')
Chain: B, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (5'-D(Cpgptpcpcp(Pda))-3')
Chain: C, G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (5'-D(Tpapgpapcpcptpgpgpapcpgpg)
Chain: D, H
Engineered: Yes
Other_details: Complementary Strand
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.208 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.992 143.573 71.165 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand AD2 enzyme Hydrolase E.C.3.2.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (6lwr.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (6lwr.pdb2.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 6LWR
  • CSU: Contacts of Structural Units for 6LWR
  • Structure Factors (438 Kb)
  • Retrieve 6LWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LWR from S2C, [Save to disk]
    • View 6LWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LWR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lwr_D] [6lwr_A] [6lwr_F] [6lwr_E] [6lwr_H] [6lwr_B] [6lwr_C] [6lwr_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LWR
  • Community annotation for 6LWR at PDBWiki (http://pdbwiki.org)

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