6SUN Antimicrobial Protein date Sep 16, 2019
title Amicoumacin Kinase Hamin In Complex With Amp-Pnp, Ca2+ And A
authors G.P.Bourenkov, Y.A.Mokrushina, S.S.Terekhov, I.V.Smirnov, A.G.Ga S.Altman
compound source
Molecule: Aph Domain-Containing Protein, Amicoumacin Kinase
Chain: A
Ec: 2.7.1.230
Engineered: Yes
Organism_scientific: Bacillus Pumilus
Organism_taxid: 1408
Gene: Bw16_03450
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.142 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.640 54.460 64.630 90.00 113.28 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand ANP, CA, UAM enzyme Transferase E.C.2.7.1.230 BRENDA
Primary referenceA kinase bioscavenger provides antibiotic resistance by extremely tight substrate binding., Terekhov SS, Mokrushina YA, Nazarov AS, Zlobin A, Zalevsky A, Bourenkov G, Golovin A, Belogurov A Jr, Osterman IA, Kulikova AA, Mitkevich VA, Lou HJ, Turk BE, Wilmanns M, Smirnov IV, Altman S, Gabibov AG, Sci Adv. 2020 Jun 24;6(26):eaaz9861. doi: 10.1126/sciadv.aaz9861. eCollection, 2020 Jun. PMID:32637600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (6sun.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6SUN
  • CSU: Contacts of Structural Units for 6SUN
  • Structure Factors (2343 Kb)
  • Retrieve 6SUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SUN from S2C, [Save to disk]
  • View 6SUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SUN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sun_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SUN
  • Community annotation for 6SUN at PDBWiki (http://pdbwiki.org)

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