7C0M Dna Binding Protein Dna date May 01, 2020
title Human Cgas-Nucleosome Complex
authors T.Kujirai, C.Zierhut, Y.Takizawa, R.Kim, L.Negishi, N.Uruma, S.Hir H.Funabiki, H.Kurumizaka
compound source
Molecule: Histone H3.1
Chain: A, E, a, e
Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3c1, H3fa, Hist1h3a, H3c2, H3fl, Hist1h3b, H3c3, H3f Hist1h3c, H3c4, H3fb, Hist1h3d, H3c6, H3fd, Hist1h3e, H3c7, Hist1h3f, H3c8, H3fh, Hist1h3g, H3c10, H3fk, Hist1h3h, H3c1 Hist1h3i, H3c12, H3fj, Hist1h3j;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F, b, f
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H4c1, H4a, H4fa, Hist1h4a, H4c2, H4i, H4fi, Hist1h4 H4g, H4fg, Hist1h4c, H4c4, H4b, H4fb, Hist1h4d, H4c5, H4 Hist1h4e, H4c6, H4c, H4fc, Hist1h4f, H4c8, H4h, H4fh, His H4c9, H4m, H4fm, Hist1h4i, H4c11, H4e, H4fe, Hist1h4j, H4 H4d, H4fd, Hist1h4k, H4c13, H4k, H4fk, Hist1h4l, H4c14, H H4f2, H4fn, Hist2h4, Hist2h4a, H4c15, H4o, H4fo, Hist2h4b, Hist4h4;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1-Be
Chain: C, G, c, g
Synonym: Histone H2a.2,Histone H2aa,Histone H2am
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2ac4, H2afm, Hist1h2ab, H2ac8, H2afa, Hist1h2ae
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b Type 1-J
Chain: D, H, d, h
Synonym: Histone H2b.1,Histone H2b.R,H2br
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2bc11, H2bfr, Hist1h2bj
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (145-Mer)
Chain: I, I
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (145-Mer)
Chain: J, j
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cyclic Gmp-Amp Synthase
Chain: K, k
Synonym: H-Cgas,2'3'-Cgamp Synthase,Mab-21 Domain-Containin 1;
Ec: 2.7.7.86
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cgas, C6orf150, Mb21d1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ZN enzyme Transferase E.C.2.7.7.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, B, b, f


c, g, C, G


d, H, h, D


e, A, a, E


Primary referenceStructural basis for the inhibition of cGAS by nucleosomes., Kujirai T, Zierhut C, Takizawa Y, Kim R, Negishi L, Uruma N, Hirai S, Funabiki H, Kurumizaka H, Science. 2020 Sep 10. pii: science.abd0237. doi: 10.1126/science.abd0237. PMID:32912999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk]
  • Biological Unit Coordinates (7c0m.pdb1.gz) 517 Kb
  • LPC: Ligand-Protein Contacts for 7C0M
  • CSU: Contacts of Structural Units for 7C0M
  • Retrieve 7C0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7C0M from S2C, [Save to disk]
  • View 7C0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7C0M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7c0m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7c0m_E] [7c0m_d] [7c0m_H] [7c0m_F] [7c0m_c] [7c0m_B] [7c0m_a] [7c0m_h] [7c0m_g] [7c0m_D] [7c0m_e] [7c0m_J] [7c0m_k] [7c0m_C] [7c0m_f] [7c0m_j] [7c0m_b] [7c0m_G] [7c0m_i] [7c0m_I] [7c0m_A] [7c0m_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7C0M
  • Community annotation for 7C0M at PDBWiki (http://pdbwiki.org)

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