7CNE Hydrolase date Jul 31, 2020
title Crystal Structure Of Sphingomyelinase C From Streptomyces Griseocarneus
authors K.Murayama, I.Fujisawa, D.Sugimori
compound source
Molecule: Sphingomyelinase C
Chain: A
Ec: 3.1.4.12
Engineered: Yes
Organism_scientific: Streptomyces Griseocarneus
Organism_taxid: 51201
Gene: Smc
Expression_system: Streptomyces Lividans
Expression_system_taxid: 1916
symmetry Space Group: P 41 21 2
R_factor 0.163 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.091 66.091 142.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EPE, SIN enzyme Hydrolase E.C.3.1.4.12 BRENDA
Primary referenceStructural basis for the high thermal stability and optimum pH of sphingomyelinase C from Streptomyces griseocarneus., Fujisawa I, Hamana H, Tomita Y, Matsumoto Y, Murayama K, Sugimori D, J Biosci Bioeng. 2020 Oct 3. pii: S1389-1723(20)30354-6. doi:, 10.1016/j.jbiosc.2020.09.005. PMID:33023861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (7cne.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 7CNE
  • CSU: Contacts of Structural Units for 7CNE
  • Structure Factors (697 Kb)
  • Retrieve 7CNE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7CNE from S2C, [Save to disk]
  • View 7CNE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7CNE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7cne_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7CNE
  • Community annotation for 7CNE at PDBWiki (http://pdbwiki.org)

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