7D97 Ligase date Oct 12, 2020
title Crystal Structure Of N109p Mutant Of Gatase Subunit Of Methanocaldococcus Jannaschii Gmp Synthetase
authors A.Bellur, A.Dongre, J.Kavya, H.Balaram
compound source
Molecule: Gmp Synthase [Glutamine-Hydrolyzing] Subunit A
Chain: A, B, C, D
Synonym: Glutamine Amidotransferase
Ec: 6.3.5.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Methanocaldococcus Jannaschii Dsm 2661
Organism_taxid: 243232
Strain: Dsm 2661
Gene: Guaaa, Mj1575
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.204 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.500 68.050 75.350 90.95 90.47 91.45
method X-Ray Diffractionresolution 1.89 Å
ligand
enzyme Ligase E.C.6.3.5.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (7d97.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (7d97.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (7d97.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (7d97.pdb4.gz) 32 Kb
  • CSU: Contacts of Structural Units for 7D97
  • Structure Factors (1576 Kb)
  • Retrieve 7D97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D97 from S2C, [Save to disk]
    • View 7D97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7D97
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d97_D] [7d97_C] [7d97_A] [7d97_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7D97
  • Community annotation for 7D97 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science