7F4Y Transferase Dna date Jun 21, 2021
title Crystal Structure Of Replisomal Dimer Of Dna Polymerase From Bacteriophage Rb69 With Dna Duplexes
authors H.S.Youn, J.Park, J.Y.An, Y.Lee, S.H.Eom, J.Wang
compound source
Molecule: Dna Polymerase
Chain: A, B
Synonym: Gp43
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Enterobacteria Phage Rb69
Organism_taxid: 12353
Gene: 43
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Tpcpapapgptpapapgpcpapgptpcpcpgpcptpc)
Chain: T, S
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpapgpcpgpgpapcptpgpcptptp 3');
Chain: P, Q
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32 2 1
R_factor 0.194 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.440 164.440 165.601 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand 5GP, CA, DUP, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (7f4y.pdb1.gz) 361 Kb
  • LPC: Ligand-Protein Contacts for 7F4Y
  • CSU: Contacts of Structural Units for 7F4Y
  • Structure Factors (3851 Kb)
  • Retrieve 7F4Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7F4Y from S2C, [Save to disk]
    • View 7F4Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7F4Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7f4y_B] [7f4y_T] [7f4y_Q] [7f4y_P] [7f4y_A] [7f4y_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7F4Y
  • Community annotation for 7F4Y at PDBWiki (http://pdbwiki.org)

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