7SVM Hydrolase date Nov 19, 2021
title Dpp8 In Complex With Ligand Iced-2
authors A.Lammens, K.Hollenstein, D.J.Klein
compound source
Molecule: Dipeptidyl Peptidase 8
Chain: A, B, C
Synonym: Dp8,Dipeptidyl Peptidase Iv-Related Protein 1,Dprp Dipeptidyl Peptidase Viii,Dpp Viii,Prolyl Dipeptidase Dpp8;
Ec: 3.4.14.5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpp8, Dprp1, Mstp097, Mstp135, Mstp141
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.177 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.288 244.937 261.487 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand D06, TMO enzyme Hydrolase E.C.3.4.14.5 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (879 Kb) [Save to disk]
  • Biological Unit Coordinates (7svm.pdb1.gz) 582 Kb
  • Biological Unit Coordinates (7svm.pdb2.gz) 581 Kb
  • LPC: Ligand-Protein Contacts for 7SVM
  • CSU: Contacts of Structural Units for 7SVM
  • Structure Factors (3256 Kb)
  • Retrieve 7SVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7SVM from S2C, [Save to disk]
    • View 7SVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7SVM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7svm_C] [7svm_A] [7svm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7SVM
  • Community annotation for 7SVM at PDBWiki (http://pdbwiki.org)

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