7S9P Dna Binding Protein Dna date Sep 21, 2021
title Ternary Complex Of Dna Polymerase Beta With Template Fapy-Dg Incoming Dctp Analog
authors B.D.Freudenthal, B.J.Ryan, M.R.Smith
compound source
Molecule: Dna (5'-D(Cpcpgpapcp(Fap) Ptpcpgpcpaptpcpapgpc)-3');
Chain: T
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpcptpgpaptpgpcpgpa)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pgptpcpgpg)-3')
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7,4.2.99.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.673 79.621 55.347 90.00 108.02 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand 8NI, CL, MN, NA, XC5 enzyme Transferase E.C.2.7.7.7 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (7s9p.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 7S9P
  • CSU: Contacts of Structural Units for 7S9P
  • Structure Factors (747 Kb)
  • Retrieve 7S9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7S9P from S2C, [Save to disk]
    • View 7S9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7S9P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7s9p_P] [7s9p_T] [7s9p_A] [7s9p_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7S9P
  • Community annotation for 7S9P at PDBWiki (http://pdbwiki.org)

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