8D46 Hydrolase date Jun 01, 2022
title Cryo-Electron Microscopy Structure Of Human Kidney Aldehyde Dehydrogenase 1a1
authors M.Lyu, E.W.Yu
compound source
Molecule: Retinal Dehydrogenase 1
Chain: A, C, D, B
Synonym: Raldh1,Aldh-E1,Alhdii,Aldehyde Dehydrogenase Famil A1,Aldehyde Dehydrogenase,Cytosolic;
Ec: 1.2.1.-,1.2.1.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh1a1, Aldc, Aldh1, Pumb1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.84 Å
ligand
enzyme Oxidoreductase E.C.1.2.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (584 Kb) [Save to disk]
  • Biological Unit Coordinates (8d46.pdb1.gz) 581 Kb
  • CSU: Contacts of Structural Units for 8D46
  • Retrieve 8D46 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8D46 from S2C, [Save to disk]
  • View 8D46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8D46
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8d46_D] [8d46_B] [8d46_C] [8d46_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 8D46
  • Community annotation for 8D46 at PDBWiki (http://pdbwiki.org)

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