9RUB	Lyase(Carbon-Carbon)	date	Nov 28, 1990
title	Crystal Structure Of Activated Ribulose-1,5-Bisphosphate Car Complexed With Its Substrate, Ribulose-1,5-Bisphosphate
authors	T.Lundqvist, G.Schneider
compound		source
Molecule: Ribulose-1,5-Bisphosphate Carboxylase Chain: A, B Ec: 4.1.1.39 Engineered: Yes		Organism_scientific: Rhodospirillum Rubrum Organism_taxid: 1085
symmetry	Space Group: P 1 21 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.500 70.600 104.100 90.00 92.10 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	FMT, MG, RUB	enzyme	Lyase E.C.4.1.1.39 BRENDA
note	9RUB (Molecule of the Month:pdb11)
related structures	by homologous chain: 1RBA, 2RUS
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of activated ribulose-1,5-bisphosphate carboxylase complexed with its substrate, ribulose-1,5-bisphosphate., Lundqvist T, Schneider G, J Biol Chem 1991 Jul 5;266(19):12604-11. PMID:1905726

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk] Biological Unit Coordinates (9rub.pdb1.gz) 138 Kb LPC: Ligand-Protein Contacts for 9RUB CSU: Contacts of Structural Units for 9RUB Likely Quarternary Molecular Structure file(s) for 9RUB Retrieve 9RUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 9RUB from S2C, [Save to disk]

View 9RUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 9RUB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 9RUB, from MSDmotif at EBI Genome occurence of 9RUB's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d9ruba1, region A:138-460 [Jmol] [rasmolscript] [script source]     - Domain d9ruba2, region A:2-137 [Jmol] [rasmolscript] [script source]     - Domain d9rubb1, region B:138-459 [Jmol] [rasmolscript] [script source]     - Domain d9rubb2, region B:2-137 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [9rub_B] [9rub] [9rub_A] SWISS-PROT database: [P04718] Domain organization of [RBL2_RHORU] by SWISSPFAM

Other resources with information on 9RUB

Community annotation for 9RUB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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