1N6C Transferase date Nov 09, 2002
title Structure Of Set79
authors T.W.Kwon, J.H.Chang, Y.Cho
compound source
Molecule: Set Domain-Containing Protein 7
Chain: A
Fragment: Residues 70-366
Synonym: Set79 Methyltransferase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21[De3]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 41 21 2
R_factor 0.203 R_Free 0.243
length a length b length c angle alpha angle beta angle gamma
93.454 93.454 110.469 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SAM enzyme
related structures by homologous chain: 1MUF

Primary referenceMechanism of histone lysine methyl transfer revealed by the structure of SET7/9-AdoMet., Kwon T, Chang JH, Kwak E, Lee CW, Joachimiak A, Kim YC, Lee J, Cho Y, EMBO J 2003 Jan 15;22(2):292-303. PMID:12514135
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1n6c.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1N6C
  • CSU: Contacts of Structural Units for 1N6C
  • Likely Quarternary Molecular Structure file(s) for 1N6C
  • Structure Factors (152 Kb)
  • Retrieve 1N6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N6C from S2C, [Save to disk]
  • Re-refined 1n6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N6C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N6C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6ca2, region A:194-363 [Jmol] [rasmolscript] [script source]
        - Domain d1n6ca1, region A:79-193 [Jmol] [rasmolscript] [script source]
  • Fold representative 1n6c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n6c] [1n6c_A]
  • SWISS-PROT database: [Q8WTS6]
  • Domain organization of [SETD7_HUMAN] by SWISSPFAM
  • Domain found in 1N6C: [SET ] by SMART
  • Other resources with information on 1N6C
  • Community annotation for 1N6C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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