1OAI Nuclear Transport date Jan 14, 2003
title Complex Between Tap Uba Domain And Fxfg Nucleoporin Peptide
authors R.P.Grant, D.Neuhaus, M.Stewart
compound source
Molecule: Nuclear Rna Export Factor
Chain: A
Fragment: Uba Domain, Residues 561-619
Synonym: Tap, Tip Associating Protein, Mrna Export Factor T
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fxfg Nucleoporin Peptide
Chain: B
Fragment: Nucleoporin Peptide, Residues 10-18
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.149 R_Free 0.159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.974 42.974 66.852 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.00 Å
note 1OAI is a representative structure
related structures by homologous chain: 1GO5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the interaction between the Tap/NXF1 UBA domain and FG nucleoporins at 1A resolution., Grant RP, Neuhaus D, Stewart M, J Mol Biol 2003 Feb 21;326(3):849-58. PMID:12581645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1oai.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1OAI
  • Likely Quarternary Molecular Structure file(s) for 1OAI
  • Structure Factors (245 Kb)
  • Retrieve 1OAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OAI from S2C, [Save to disk]
  • Re-refined 1oai structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OAI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1OAI 1OAIA 1OAIB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OAI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oaia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1oai from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oai_B] [1oai_A] [1oai]
  • SWISS-PROT database: [Q9UBU9]
  • Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB.
  • Domain organization of [NXF1_HUMAN] by SWISSPFAM
  • Domain found in 1OAI: [TAP_C ] by SMART
  • Other resources with information on 1OAI
  • Community annotation for 1OAI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science