1QIO Hydrolase date Jun 14, 1999
title Specific Chemical And Structural Damage Caused By Intense Sy Radiation To Hen Egg White Lysozyme
authors G.Kryger, M.Weik, R.B.Ravelli
compound source
Molecule: Lysozyme
Chain: A
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Cellular_location: Egg White
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.929 76.929 37.207 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CL, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 135L, 1LJN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpecific chemical and structural damage to proteins produced by synchrotron radiation., Weik M, Ravelli RB, Kryger G, McSweeney S, Raves ML, Harel M, Gros P, Silman I, Kroon J, Sussman JL, Proc Natl Acad Sci U S A 2000 Jan 18;97(2):623-8. PMID:10639129
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1qio.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1QIO
  • CSU: Contacts of Structural Units for 1QIO
  • Likely Quarternary Molecular Structure file(s) for 1QIO
  • Structure Factors (287 Kb)
  • Retrieve 1QIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QIO from S2C, [Save to disk]
  • Re-refined 1qio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QIO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1QIO from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QIO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qioa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1qio from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qio] [1qio_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1QIO: [LYZ1 ] by SMART
  • Other resources with information on 1QIO
  • Community annotation for 1QIO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1QIO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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