2J8B Lipid Binding Protein date Oct 24, 2006
title High Resolution Structure Of Human Cd59
authors K.J.Leath, S.Johnson, P.Roversi, B.P.Morgan, R.A.G.Smith, S.M.Lea
compound source
Molecule: Cd59 Glycoprotein
Chain: A
Fragment: Mature Polypeptide, Residues 26-103
Synonym: Membrane Attack Complex Inhibition Factor, Macif, Inhibitory Protein, Mac-Ip, Protectin, Mem43 Antigen, Membr Inhibitor Of Reactive Lysis, Mirl, 20 Kda Homologous Restri Factor, Hrf-20,Hrf20,1f5 Antigen, Cd59;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Lymphocytes, Erythrocytes, Platelets, Endothelia, Epi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ut5600 (De3)
Expression_system_plasmid: Pet59-06
Other_details: Purified From Inclusion Bodies After Express Escherichia Coli
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.948 45.918 46.033 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
note 2J8B is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution structures of bacterially expressed soluble human CD59., Leath KJ, Johnson S, Roversi P, Hughes TR, Smith RA, Mackenzie L, Morgan BP, Lea SM, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Aug 1;63(Pt, 8):648-52. Epub 2007 Jul 28. PMID:17671359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2j8b.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2J8B
  • Structure Factors (201 Kb)
  • Retrieve 2J8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J8B from S2C, [Save to disk]
  • Re-refined 2j8b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J8B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J8B, from MSDmotif at EBI
  • Fold representative 2j8b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j8b] [2j8b_A]
  • SWISS-PROT database: [P13987]
  • Domain organization of [CD59_HUMAN] by SWISSPFAM
  • Domain found in 2J8B: [LU ] by SMART
  • Other resources with information on 2J8B
  • Community annotation for 2J8B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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