3A90 Hydrolase date Oct 15, 2009
title Crystal Structure Of Hen Egg White Lysozyme Soaked With 1mm Rhcl3
authors S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 43 21 2
R_factor 0.189 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.743 78.743 37.048 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CL, GOL, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces., Ueno T, Abe S, Koshiyama T, Ohki T, Hikage T, Watanabe Y, Chemistry. 2010 Mar 1;16(9):2730-40. PMID:20146274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3a90.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 3A90
  • CSU: Contacts of Structural Units for 3A90
  • Structure Factors (264 Kb)
  • Retrieve 3A90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A90 from S2C, [Save to disk]
  • Re-refined 3a90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A90 in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A90
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3A90, from MSDmotif at EBI
  • Fold representative 3a90 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a90] [3a90_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3A90: [LYZ1 ] by SMART
  • Other resources with information on 3A90
  • Community annotation for 3A90 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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