3A94 Hydrolase date Oct 15, 2009
title Crystal Structure Of Hen Egg White Lysozyme Soaked With 100mm Rhcl3
authors S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 43 21 2
R_factor 0.199 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.912 77.912 37.426 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CL, NA, RH3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces., Ueno T, Abe S, Koshiyama T, Ohki T, Hikage T, Watanabe Y, Chemistry. 2010 Mar 1;16(9):2730-40. PMID:20146274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3a94.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3A94
  • CSU: Contacts of Structural Units for 3A94
  • Structure Factors (216 Kb)
  • Retrieve 3A94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A94 from S2C, [Save to disk]
  • Re-refined 3a94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A94 in 3D
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  • Visual 3D analysis of 3A94
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3A94, from MSDmotif at EBI
  • Fold representative 3a94 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a94] [3a94_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3A94: [LYZ1 ] by SMART
  • Other resources with information on 3A94
  • Community annotation for 3A94 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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