3BYH Structural Protein date Jan 16, 2008
title Model Of Actin-Fimbrin Abd2 Complex
authors V.E.Galkin, A.Orlova, O.Cherepanova, M.C.Lebart, E.H.Egelman
compound source
Molecule: Actin
Chain: A
Synonym: Beta-Actin, Ps1tp5-Binding Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ps1tp5bp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fimbrin Abd2
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.00 Å


Primary referenceHigh-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex., Galkin VE, Orlova A, Cherepanova O, Lebart MC, Egelman EH, Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1494-8. Epub 2008 Jan 30. PMID:18234857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3byh.pdb1.gz) 814 Kb
  • CSU: Contacts of Structural Units for 3BYH
  • Likely Quarternary Molecular Structure file(s) for 3BYH
  • Retrieve 3BYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BYH from S2C, [Save to disk]
  • View 3BYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BYH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BYH, from MSDmotif at EBI
  • Fold representative 3byh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3byh_B] [3byh_A] [3byh]
  • SWISS-PROT database: [P60709] [Q2V3E6]
  • Domain organization of [ACTB_HUMAN] [Q2V3E6_ARATH] by SWISSPFAM
  • Domains found in 3BYH: [ACTIN] [CH ] by SMART
  • Other resources with information on 3BYH
  • Community annotation for 3BYH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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