3GRO Hydrolase date Mar 26, 2009
title Human Palmitoyl-Protein Thioesterase 1
authors E.Dobrovetsky, A.Seitova, Y.Tong, W.Tempel, A.Dong, C.H.Arrowsmit A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, D.Cossar, H.Park Structural Genomics Consortium (Sgc)
compound source
Molecule: Palmitoyl-Protein Thioesterase 1
Chain: A, B
Synonym: Ppt-1, Palmitoyl-Protein Hydrolase 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppt1, Ppt
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfhmsp-Lic-C
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
53.710 90.642 129.165 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand MSE, UNX enzyme Hydrolase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3gro.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3GRO
  • CSU: Contacts of Structural Units for 3GRO
  • Likely Quarternary Molecular Structure file(s) for 3GRO
  • Structure Factors (336 Kb)
  • Retrieve 3GRO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GRO from S2C, [Save to disk]
  • Re-refined 3gro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GRO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GRO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GRO, from MSDmotif at EBI
  • Fold representative 3gro from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gro_B] [3gro] [3gro_A]
  • SWISS-PROT database: [P50897]
  • Domain organization of [PPT1_HUMAN] by SWISSPFAM
  • Other resources with information on 3GRO
  • Community annotation for 3GRO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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