3PLZ Transcription Receptor Agonist date Nov 15, 2010
title Human Lrh1 Lbd Bound To Gr470
authors S.P.Williams, R.Xu, W.J.Zuercher
compound source
Molecule: Ftz-F1 Related Protein
Chain: A, B
Fragment: Unp Residues 300-541
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr5a2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plrh1_lbd

Molecule: Nuclear Receptor Coactivator 2
Chain: C, D
Fragment: Unp Residues 740-753
Synonym: Ncoa-2, Class E Basic Helix-Loop-Helix Protein 75, Transcriptional Intermediary Factor 2, Htif2;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.214
length a length b length c angle alpha angle beta angle gamma
52.667 89.054 65.453 90.00 101.71 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand 470, EDO BindingDB enzyme
A, B

Primary referenceSmall Molecule Agonists of the Orphan Nuclear Receptors Steroidogenic Factor-1 (SF-1, NR5A1) and Liver Receptor Homologue-1 (LRH-1, NR5A2)., Whitby RJ, Stec J, Blind RD, Dixon S, Leesnitzer LM, Orband-Miller LA, Williams SP, Willson TM, Xu R, Zuercher WJ, Cai F, Ingraham HA, J Med Chem. 2011 Mar 10. PMID:21391689
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3plz.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (3plz.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3PLZ
  • CSU: Contacts of Structural Units for 3PLZ
  • Structure Factors (1189 Kb)
  • Retrieve 3PLZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PLZ from S2C, [Save to disk]
  • Re-refined 3plz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PLZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PLZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PLZ, from MSDmotif at EBI
  • Fold representative 3plz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3plz_B] [3plz_D] [3plz] [3plz_C] [3plz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PLZ: [HOLI ] by SMART
  • Other resources with information on 3PLZ
  • Community annotation for 3PLZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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