3UDB Transferase date Oct 27, 2011
title Crystal Structure Of Snrk2.6
authors T.Xie, R.Ren, Y.Pang, C.Yan
compound source
Molecule: Serinethreonine-Protein Kinase Srk2e
Chain: A, B, C, D, E, F
Fragment: Residues 1-317
Synonym: Protein Open Stomata 1, Snf1-Related Kinase 2.6, S Serinethreonine-Protein Kinase Ost1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale-Cress
Organism_taxid: 3702
Gene: Snrk2.6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.259
length a length b length c angle alpha angle beta angle gamma
228.094 98.793 113.103 90.00 98.48 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand CL enzyme Transferase E.C. BRENDA
F, A, D, C, E, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (553 Kb) [Save to disk]
  • Biological Unit Coordinates (3udb.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3udb.pdb2.gz) 97 Kb
  • Biological Unit Coordinates (3udb.pdb3.gz) 91 Kb
  • Biological Unit Coordinates (3udb.pdb4.gz) 96 Kb
  • Biological Unit Coordinates (3udb.pdb5.gz) 88 Kb
  • Biological Unit Coordinates (3udb.pdb6.gz) 95 Kb
  • Biological Unit Coordinates (3udb.pdb7.gz) 366 Kb
  • Biological Unit Coordinates (3udb.pdb8.gz) 359 Kb
  • LPC: Ligand-Protein Contacts for 3UDB
  • CSU: Contacts of Structural Units for 3UDB
  • Structure Factors (1090 Kb)
  • Retrieve 3UDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UDB from S2C, [Save to disk]
  • Re-refined 3udb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UDB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UDB, from MSDmotif at EBI
  • Fold representative 3udb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3udb_A] [3udb_D] [3udb_F] [3udb_E] [3udb_C] [3udb_B] [3udb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UDB: [S_TKc ] by SMART
  • Other resources with information on 3UDB
  • Community annotation for 3UDB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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